Arantza Casillas
Domaines médical et juridique [FR]
Les techniques de traitement du langage naturel nécessitent généralement d'adaptation lorsqu'elles sont utilisées dans des domaines spécifiques tels que les domaines médical et juridique.
Dans le domaine de la santé, nous avons commencé en 2010 à collaborer avec l'hôpital de Galdakao-Usansolo dans le but d'améliorer l'encodage de leurs dossiers de santé d'accord avec la Classification Internationale des Maladies (CIM). Par la suite, et...lire la suite
Chercheur/se principal/e:
Chercheurs:
domains_tabs
Demos
Clinical entity and relation extraction in Spanish
Insert a text from the clinical domain and the systems will detect the disorders, drugs, body parts and procedures in it as well as adverse drug reactions and relations between disorders
Contrats
- Extracción de información de instrumentos PRO
(2021 - 2022) 
Testu klinikoak euskaratik eta euskarara egokitzeko itzultzaile automatiko baten garapena eta ezartzea
(2019 - 2021)- PRIDAIAS: Hacia la PRIvacidad de los Datos en Aplicaciones de Inteligencia Artificial para la Salud
(2020 - 2021)
Projects
Development Of Text-based Technology to support diagnosis, prevention and HEALTH institutions management
(2020 - 2023)
PROSA-MED: Advanced semantic textual processing for the detection of diagnostic codes, procedures, concepts and their relationships in health records
(2016 - 2019)
DETEAMI: Automatic detection of adverse drug effects in medical reports using natural language processing technologies.
(2015 - 2018) All HiTZ projects
Patents
Publications
Sara Santiso , Alicia Pérez, Arantza Casillas
Adverse Drug Reaction extraction: Tolerance to entity recognition errors and sub-domain variants (2021)
Computer Methods and Programs in Biomedicine. https://www.sciencedirect.com/science/article/pii/S0169260720317247?dgcid=author
Sara Santiso
Adverse Drug Reaction extraction on Electronic Health Records written in Spanish: A PhD Thesis overview (2021)
IberSPEECH 2020 https://www.isca-speech.org/archive/IberSPEECH_2021/pdfs/34.pdf
Iakes Goenaga, Xabier Lahuerta, Aitziber Atutxa, Koldo Gojenola
A Section Identification Tool: towards HL7 CDA/CCR Standardization in Spanish Discharge Summaries (2021)
Journal of Biomedical Informatics
Prys Delyth, Sarasola Kepa, Alegria Iñaki, Perez-de-Viñaspre Olatz, Palmer Geraint, Corcoran Padraig, Arman Laura, Knight Dawn ,Spasic Irena, Bryn Jones Dewi, Cooper Sarah, Prys Myfyr, Muralidaran Vigneshwaran, O’Hare Keeziah, Prys Gruffudd, Watkins Gareth, Roberts Jonathan C, Butcher Peter W. S., Lew Robert, Rees Geraint, Sharma Nirwan, Frankenberg-Garcia Ana, Farhat Leena Sarah, Teahan William John.
Language and Technology in Wales: Volume I (2021)
Language and Technology in Wales: Volume I. University of Bangor. ISBN: 978-1-84220-189-3
Prys Delyth, Sarasola Kepa, Alegria Iñaki, Perez-de-Viñaspre Olatz, Palmer Geraint, Corcoran Padraig, Arman Laura, Knight Dawn ,Spasic Irena, Bryn Jones Dewi, Cooper Sarah, Prys Myfyr, Muralidaran Vigneshwaran, O’Hare Keeziah, Prys Gruffudd, Watkins Gareth, Roberts Jonathan C, Butcher Peter W. S., Lew Robert, Rees Geraint, Sharma Nirwan, Frankenberg-Garcia Ana, Farhat Leena Sarah, Teahan William John.
Iaith a Thechnoleg yng Nghymru: Cyfrol 1 (2021)
Iaith a Thechnoleg yng Nghymru: Cyfrol 1. University of Bangor. ISBN: 978-1-84220-189-6
Alberto Blanco, Sonja Remmer, Alicia Pérez, Hercules Dalianis, Arantza Casillas
On the Contribution of Per-ICD Attention Mechanisms to Classify Health Records in Languages With Fewer Resources than English (2021)
Proceedings of the International Conference on Recent Advances in Natural Language Processing, RANLP 2021, Varna, Bulgaria, September 1-3, 2021. Deep Learning for Natural Language Processing Methods and Applications.
Ander Cejudo, Owen Trigueros, Alicia Pérez, Arantza Casillas, Daniel Cobos
Verbal Autopsy: First Steps Towards Questionnaire Reduction (2021)
Ekštein K., Pártl F., Konopík M. Text, Speech, and Dialogue. TSD 2021. Lecture Notes in Computer Science, vol 12848. Springer, Cham.
Sergio Santana, Alicia Pérez, Arantza Casillas, Maite Oronoz
Erlazio-erauzketa testu klinikoetan hizkuntzaren prozesamenduaren bidez (2021)
IV. IKERGAZTE NAZIOARTEKO IKERKETA EUSKARAZ. UEU
Alberto Blanco, Olatz Perez de Viñaspre, Alicia Pérez, Arantza Casillas
Boosting ICD multi-label classification of health records with contextual embeddings and label-granularity (2020)
Computer Methods and Programs in Biomedicine, Volume 188, 105264
Rebecka Weegar, Alicia Pérez, Arantza Casillas, Maite Oronoz
Recent advances in Swedish and Spanish medical entity recognition in clinical texts using deep neural approaches (2020)
BMC Medical Informatics and Decision Making
Sara Santiso
Adverse Drug Reaction extraction on Electronic Health Records written in Spanish (2020)
Procesamiento del Lenguaje Natural http://journal.sepln.org/sepln/ojs/ojs/index.php/pln/article/view/6203
Sara Santiso, Alicia Pérez, Arantza Casillas, Maite Oronoz
Neural negated entity recognition in Spanish electronic health records (2020)
Journal of Biomedical Informatics (JBI) https://doi.org/10.1016/j.jbi.2020.103419
Alberto Blanco, Alicia Pérez, Arantza Casillas, Daniel Cobos
Extracting Cause of Death from Verbal Autopsy with Deep Learning interpretable methods (2020)
IEEE Journal of Biomedical and Health Informatics
Santana, S and Pérez, A and Casillas, A
HapLap at eHealth-KD Challenge 2020 (2020)
Proceedings of the Iberian Languages Evaluation Forum co-located with 36th Conference of the Spanish Society for Natural Language Processing, IberLEF@ SEPLN
Alberto Blanco, Alicia Pérez, Arantza Casillas
Extreme multi-label ICD classification: sensitivity to hospital service and time (2020)
IEEE Access, Volume 8, 183534-183545
Alberto Blanco, Alicia Pérez, Arantza Casillas
Automatic Classification of Medical Records with Multi-label Classifiers and Similarity Match Coders (2020)
CEUR Workshop Proceedings, Vol 2696 - Working Notes of CLEF 2020 - Conference and Labs of the Evaluation Forum
Kepa Sarasola, Iñaki Alegria, Olatz Perez de Viñaspre
Language Technology for Language Communities: An Overview based on Basque Experience 2020 (2020)file2 (2020)
Symposiwm Academaidd Technolegau Iaith Cymru 2020 -11-04 // Wales Academic Symposium on Language Technologies 2020-11-04
Iker de la Iglesia, Mikel Martinez-Puente, Alexander Platas, Iria San Miguel, Aitziber Atutxa, Koldo Gojenola
MEDIA team at the CLEF-2020 MultilingualInformation Extraction Task (2020)
Working Notes of CLEF 2020 - Conference and Labs of the Evaluation Forum Thessaloniki, Greece, September 22-25, 2020.
Rachel Bawden, Giorgio Maria Di Nunzio, Cristian Grozea, Inigo Jauregi Unanue, Antonio Jimeno Yepes, Nancy Mah, David Martinez, Aurélie Névéol, Mariana Neves, Maite Oronoz, Olatz Perez-de-Viñaspre, Massimo Piccardi, Roland Roller, Amy Siu, Philippe Thomas, Federica Vezzani, Maika Vicente Navarro, Dina Wiemann and Lana Yeganova
Findings of the WMT 2020 Biomedical Translation Shared Task: Basque, Italian and Russian as New Additional Languages (2020)
Fith Conference on Machine Translation (WMT20). Shared Task: Biomedical Translation Task
Bernardo Magnini, Begoña Altuna, Alberto Lavelli, Manuela Speranza, Roberto Zanoli
The E3C Project:Collection and Annotation of a Multilingual Corpus of Clinical Cases (2020)
In Johanna Monti, Felice Dell'Orletta and Fabio Tamburini (eds.), Proceedings of the Seventh Italian Conference on Computational Linguistics. Associazione Italiana di Linguistica Computazionale. Bologna, Italy, 2020.
Lima S., Pérez-Miguel N., Cuadros M. and Rigau G.
NUBes: A Corpus of Negation and Uncertainty in Spanish Clinical Texts. (2020)
Proceedings of the 12th Language Resources and Evaluation Conference (LREC'20). Marseille, France. 2020.
Perez, N; Accuosto, P; Bravo, A; Quadres, M; Martinez-Garcia, E; Saggion, H; Rigau, G.
Cross-lingual semantic annotation of Biomedical literature: experiments in Spanish and English (2020)
Bioinformatics, 36, 6, 1872-1880. , ISSN 1367-1880
Sara Santiso, Alicia Pérez, Arantza Casillas
Smoothing dense spaces for improved relation extraction between drugs and adverse reactions (2019)
International Journal of Medical Informatics https://doi.org/10.1016/j.ijmedinf.2019.05.009
Aitziber Atutxa, Arantza Diaz de Ilarraza, koldo Gojenola,Maite Oronoz, Olatz Perez de Viñaspre
Interpretable Deep Learning to Map Diagnostic Texts to ICD10 Codes (2019)
International Journal of Medical Informatics https://doi.org/10.1016/j.ijmedinf.2019.05.015 Link to publication: https://authors.elsevier.com/c/1ZANI4xGJ~syOE
Arantza Casillas, Nerea Ezeiza, Iakes Goenaga, Alicia Pérez, Xabier Soto
Measuring the Effect of Different Types of Unsupervised Word Representations on Medical Named Entity Recognition (2019)
International Journal of Medical Informatics, Volume 129, September 2019, Pages 100-106.
Alberto Blanco, Arantza Casillas, Alicia Pérez, Arantza Diaz de Ilarraza
Multi-label clinical document classification: Impact of label-density (2019)
Expert Systems with Applications, Volume 138, 112835
Olatz Perez-de-Viñaspre, Maite Oronoz, Natalia Elvira
KabiTermICD: Nested Term Based Translation of the ICD-10-CM into a Minor Language (2018)
Workshop "MultilingualBIO: Multilingual Biomedical Text Processing" of LREC 2018. Proceedings of the workshop. Miyazaki (Japan), 8th May 2018.
Jorge Pérez, Alicia Pérez, Arantza Casillas, Koldo Gojenola
Cardiology record multi-label classification using Latent Dirichlet Allocation (2018)
Computer Methods and Programs in Biomedicine https://doi.org/10.1016/j.cmpb.2018.07.002
Aitziber Atutxa, Arantza Casillas, Nerea Ezeiza, Iakes Goenaga, V. Fresno, Koldo Gojenola, R. Martinez, Maite Oronoz, Olatz Perez-de-Viñaspre
IxaMed at CLEF eHealth 2018 Task 1: ICD10 Coding with a Sequence-to-Sequence approach (2018)
CLEF 2018 Online Working Notes. CEUR-WS
Mikel Laburu, Alicia Pérez, Arantza Casillas, Iakes Goenaga, Maite Oronoz
Can I find information about rare diseases in some other language? (2018)
IEEE International Conference on Bioinformatics and Biomedicine. Artificial Intelligence techniques for Biomedicine and Healthcare. Madrid (December, 2018); ISBN: 978-1-5386-5487-3; Pgs: 2102-2108
Aitziber Atutxa, Alicia Pérez, Arantza Casillas
Machine Learning approaches on Diagnostic Term Encoding with the ICD for Clinical Documentation (2017)
IEEE Journal of Biomedical and Health Informatics, issue 99
domains_tabs_full
Clinical entity and relation extraction in Spanish
Insert a text from the clinical domain and the systems will detect the disorders, drugs, body parts and procedures in it as well as adverse drug reactions and relations between disorders
- Extracción de información de instrumentos PRO
(2021 - 2022)
Testu klinikoak euskaratik eta euskarara egokitzeko itzultzaile automatiko baten garapena eta ezartzea
(2019 - 2021)- PRIDAIAS: Hacia la PRIvacidad de los Datos en Aplicaciones de Inteligencia Artificial para la Salud
(2020 - 2021)
Development Of Text-based Technology to support diagnosis, prevention and HEALTH institutions management
(2020 - 2023)
PROSA-MED: Advanced semantic textual processing for the detection of diagnostic codes, procedures, concepts and their relationships in health records
(2016 - 2019)
DETEAMI: Automatic detection of adverse drug effects in medical reports using natural language processing technologies.
(2015 - 2018) All HiTZ projects
Sara Santiso , Alicia Pérez, Arantza Casillas
Adverse Drug Reaction extraction: Tolerance to entity recognition errors and sub-domain variants (2021)
Computer Methods and Programs in Biomedicine. https://www.sciencedirect.com/science/article/pii/S0169260720317247?dgcid=author
Sara Santiso
Adverse Drug Reaction extraction on Electronic Health Records written in Spanish: A PhD Thesis overview (2021)
IberSPEECH 2020 https://www.isca-speech.org/archive/IberSPEECH_2021/pdfs/34.pdf
Iakes Goenaga, Xabier Lahuerta, Aitziber Atutxa, Koldo Gojenola
A Section Identification Tool: towards HL7 CDA/CCR Standardization in Spanish Discharge Summaries (2021)
Journal of Biomedical Informatics
Prys Delyth, Sarasola Kepa, Alegria Iñaki, Perez-de-Viñaspre Olatz, Palmer Geraint, Corcoran Padraig, Arman Laura, Knight Dawn ,Spasic Irena, Bryn Jones Dewi, Cooper Sarah, Prys Myfyr, Muralidaran Vigneshwaran, O’Hare Keeziah, Prys Gruffudd, Watkins Gareth, Roberts Jonathan C, Butcher Peter W. S., Lew Robert, Rees Geraint, Sharma Nirwan, Frankenberg-Garcia Ana, Farhat Leena Sarah, Teahan William John.
Language and Technology in Wales: Volume I (2021)
Language and Technology in Wales: Volume I. University of Bangor. ISBN: 978-1-84220-189-3
Prys Delyth, Sarasola Kepa, Alegria Iñaki, Perez-de-Viñaspre Olatz, Palmer Geraint, Corcoran Padraig, Arman Laura, Knight Dawn ,Spasic Irena, Bryn Jones Dewi, Cooper Sarah, Prys Myfyr, Muralidaran Vigneshwaran, O’Hare Keeziah, Prys Gruffudd, Watkins Gareth, Roberts Jonathan C, Butcher Peter W. S., Lew Robert, Rees Geraint, Sharma Nirwan, Frankenberg-Garcia Ana, Farhat Leena Sarah, Teahan William John.
Iaith a Thechnoleg yng Nghymru: Cyfrol 1 (2021)
Iaith a Thechnoleg yng Nghymru: Cyfrol 1. University of Bangor. ISBN: 978-1-84220-189-6
Alberto Blanco, Sonja Remmer, Alicia Pérez, Hercules Dalianis, Arantza Casillas
On the Contribution of Per-ICD Attention Mechanisms to Classify Health Records in Languages With Fewer Resources than English (2021)
Proceedings of the International Conference on Recent Advances in Natural Language Processing, RANLP 2021, Varna, Bulgaria, September 1-3, 2021. Deep Learning for Natural Language Processing Methods and Applications.
Ander Cejudo, Owen Trigueros, Alicia Pérez, Arantza Casillas, Daniel Cobos
Verbal Autopsy: First Steps Towards Questionnaire Reduction (2021)
Ekštein K., Pártl F., Konopík M. Text, Speech, and Dialogue. TSD 2021. Lecture Notes in Computer Science, vol 12848. Springer, Cham.
Sergio Santana, Alicia Pérez, Arantza Casillas, Maite Oronoz
Erlazio-erauzketa testu klinikoetan hizkuntzaren prozesamenduaren bidez (2021)
IV. IKERGAZTE NAZIOARTEKO IKERKETA EUSKARAZ. UEU
Alberto Blanco, Olatz Perez de Viñaspre, Alicia Pérez, Arantza Casillas
Boosting ICD multi-label classification of health records with contextual embeddings and label-granularity (2020)
Computer Methods and Programs in Biomedicine, Volume 188, 105264
Rebecka Weegar, Alicia Pérez, Arantza Casillas, Maite Oronoz
Recent advances in Swedish and Spanish medical entity recognition in clinical texts using deep neural approaches (2020)
BMC Medical Informatics and Decision Making
Sara Santiso
Adverse Drug Reaction extraction on Electronic Health Records written in Spanish (2020)
Procesamiento del Lenguaje Natural http://journal.sepln.org/sepln/ojs/ojs/index.php/pln/article/view/6203
Sara Santiso, Alicia Pérez, Arantza Casillas, Maite Oronoz
Neural negated entity recognition in Spanish electronic health records (2020)
Journal of Biomedical Informatics (JBI) https://doi.org/10.1016/j.jbi.2020.103419
Alberto Blanco, Alicia Pérez, Arantza Casillas, Daniel Cobos
Extracting Cause of Death from Verbal Autopsy with Deep Learning interpretable methods (2020)
IEEE Journal of Biomedical and Health Informatics
Santana, S and Pérez, A and Casillas, A
HapLap at eHealth-KD Challenge 2020 (2020)
Proceedings of the Iberian Languages Evaluation Forum co-located with 36th Conference of the Spanish Society for Natural Language Processing, IberLEF@ SEPLN
Alberto Blanco, Alicia Pérez, Arantza Casillas
Extreme multi-label ICD classification: sensitivity to hospital service and time (2020)
IEEE Access, Volume 8, 183534-183545
Alberto Blanco, Alicia Pérez, Arantza Casillas
Automatic Classification of Medical Records with Multi-label Classifiers and Similarity Match Coders (2020)
CEUR Workshop Proceedings, Vol 2696 - Working Notes of CLEF 2020 - Conference and Labs of the Evaluation Forum
Kepa Sarasola, Iñaki Alegria, Olatz Perez de Viñaspre
Language Technology for Language Communities: An Overview based on Basque Experience 2020 (2020)file2 (2020)
Symposiwm Academaidd Technolegau Iaith Cymru 2020 -11-04 // Wales Academic Symposium on Language Technologies 2020-11-04
Iker de la Iglesia, Mikel Martinez-Puente, Alexander Platas, Iria San Miguel, Aitziber Atutxa, Koldo Gojenola
MEDIA team at the CLEF-2020 MultilingualInformation Extraction Task (2020)
Working Notes of CLEF 2020 - Conference and Labs of the Evaluation Forum Thessaloniki, Greece, September 22-25, 2020.
Rachel Bawden, Giorgio Maria Di Nunzio, Cristian Grozea, Inigo Jauregi Unanue, Antonio Jimeno Yepes, Nancy Mah, David Martinez, Aurélie Névéol, Mariana Neves, Maite Oronoz, Olatz Perez-de-Viñaspre, Massimo Piccardi, Roland Roller, Amy Siu, Philippe Thomas, Federica Vezzani, Maika Vicente Navarro, Dina Wiemann and Lana Yeganova
Findings of the WMT 2020 Biomedical Translation Shared Task: Basque, Italian and Russian as New Additional Languages (2020)
Fith Conference on Machine Translation (WMT20). Shared Task: Biomedical Translation Task
Bernardo Magnini, Begoña Altuna, Alberto Lavelli, Manuela Speranza, Roberto Zanoli
The E3C Project:Collection and Annotation of a Multilingual Corpus of Clinical Cases (2020)
In Johanna Monti, Felice Dell'Orletta and Fabio Tamburini (eds.), Proceedings of the Seventh Italian Conference on Computational Linguistics. Associazione Italiana di Linguistica Computazionale. Bologna, Italy, 2020.
Lima S., Pérez-Miguel N., Cuadros M. and Rigau G.
NUBes: A Corpus of Negation and Uncertainty in Spanish Clinical Texts. (2020)
Proceedings of the 12th Language Resources and Evaluation Conference (LREC'20). Marseille, France. 2020.
Perez, N; Accuosto, P; Bravo, A; Quadres, M; Martinez-Garcia, E; Saggion, H; Rigau, G.
Cross-lingual semantic annotation of Biomedical literature: experiments in Spanish and English (2020)
Bioinformatics, 36, 6, 1872-1880. , ISSN 1367-1880
Sara Santiso, Alicia Pérez, Arantza Casillas
Smoothing dense spaces for improved relation extraction between drugs and adverse reactions (2019)
International Journal of Medical Informatics https://doi.org/10.1016/j.ijmedinf.2019.05.009
Aitziber Atutxa, Arantza Diaz de Ilarraza, koldo Gojenola,Maite Oronoz, Olatz Perez de Viñaspre
Interpretable Deep Learning to Map Diagnostic Texts to ICD10 Codes (2019)
International Journal of Medical Informatics https://doi.org/10.1016/j.ijmedinf.2019.05.015 Link to publication: https://authors.elsevier.com/c/1ZANI4xGJ~syOE
Arantza Casillas, Nerea Ezeiza, Iakes Goenaga, Alicia Pérez, Xabier Soto
Measuring the Effect of Different Types of Unsupervised Word Representations on Medical Named Entity Recognition (2019)
International Journal of Medical Informatics, Volume 129, September 2019, Pages 100-106.
Alberto Blanco, Arantza Casillas, Alicia Pérez, Arantza Diaz de Ilarraza
Multi-label clinical document classification: Impact of label-density (2019)
Expert Systems with Applications, Volume 138, 112835
Olatz Perez-de-Viñaspre, Maite Oronoz, Natalia Elvira
KabiTermICD: Nested Term Based Translation of the ICD-10-CM into a Minor Language (2018)
Workshop "MultilingualBIO: Multilingual Biomedical Text Processing" of LREC 2018. Proceedings of the workshop. Miyazaki (Japan), 8th May 2018.
Jorge Pérez, Alicia Pérez, Arantza Casillas, Koldo Gojenola
Cardiology record multi-label classification using Latent Dirichlet Allocation (2018)
Computer Methods and Programs in Biomedicine https://doi.org/10.1016/j.cmpb.2018.07.002
Aitziber Atutxa, Arantza Casillas, Nerea Ezeiza, Iakes Goenaga, V. Fresno, Koldo Gojenola, R. Martinez, Maite Oronoz, Olatz Perez-de-Viñaspre
IxaMed at CLEF eHealth 2018 Task 1: ICD10 Coding with a Sequence-to-Sequence approach (2018)
CLEF 2018 Online Working Notes. CEUR-WS
Mikel Laburu, Alicia Pérez, Arantza Casillas, Iakes Goenaga, Maite Oronoz
Can I find information about rare diseases in some other language? (2018)
IEEE International Conference on Bioinformatics and Biomedicine. Artificial Intelligence techniques for Biomedicine and Healthcare. Madrid (December, 2018); ISBN: 978-1-5386-5487-3; Pgs: 2102-2108
Aitziber Atutxa, Alicia Pérez, Arantza Casillas
Machine Learning approaches on Diagnostic Term Encoding with the ICD for Clinical Documentation (2017)
IEEE Journal of Biomedical and Health Informatics, issue 99
