Medikuntza arloko eta arlo juridikoko hizkuntzaren prozesamendua

Osasunaren eta legearen domeinuak

Hizkuntza prozesatzeko teknikak domeinu zehatzetara eramaten direnean, osasunaren eta legearen domeinuetara adibidez, hainbat egokitzapen behar izaten dira testu horien berezitasunak modu egokian jasotzeko.

Osasunaren eta legearen domeinuak

Osasunaren domeinuan Galdakaoko-Usansoloko Ospitalearekin 2010ean hasi ginen elkarlanean Gaixotasunen Nazioarteko Sailkapenaren (GNS) kodeketa automatikoa hobetzen. Orduz geroztik, eta beti ere pazienteari ematen zaion arreta hobetzeko asmoz, hainbat atazetan egin dugu lan: botiken aurkako erreakzioak detektatzen, osasunaren alorreko entitate izendunak ezagutzen (botika-izenak, gaixotasunak, gorputz-egiturak e.a.) eta azken aldian, osasun-txostenen itzulpen automatikoan. Lan gehienak gaztelerazko osasun-txostenekin egin baditugu ere, ingeleseko corpusak ere erabili ditugu, eta guretzat oso garrantzitsua dena, euskara osasun-zerbitzuetara eramateko urrats garrantzitsuak eman ditugu. Ildo honetan, SNOMED CT medikuntzako lexikoi erraldoia automatikoki euskaratu dugu eta euskara eta gaztelera arteko itzulpen automatiko neuronalarekin lehen emaitzak lortu ditugu.

Osakidetzako hainbat ospitalekin batera eskatu ditugu OSAKU, DETEAMI, EXTRECM eta PROSAMED proiektuak, eta Osakidetzako Euskara Zerbitzuaren enkarguz GNS-10 sailkapenaren itzulpen automatikoa egin dugu.

Domainu legalaren alorrean 2018an Minsait enpresarentzat lanean aritu ginen Prótagoras izeneko barne proiektu batean laguntzen. Proiektuak Hizkuntza Naturalaren Ulermena du helburu eta lehen pausu bezala, domeinu legaleko dokumentatze-prozesuan zentratu ginen. Jakin badakigu dokumentu multzo izugarri handiak sortzen direla eta berebiziko garrantzia duela datu andana horien antolaketa eta biltegiratze azkarrak egitea erabakiak era efikazean hartzeko.

Proiektuaren emaitza bezala kasu erreal bateko informazio erauzketa egiteko soluzioa aurkeztu genuen. Notaritzako eskrituretatik informazio erauzteko gai den sistema garatu genuen. Balio erantsi bezala, gure sistemak ez du inolako datu anotaturik erabiltzen patroiak ikasteko, horrela, dokumentu horietatik deskribatutako ondasunen ezaugarri nagusiak (eraikinaren helbidea, balioa eta abar) antzemateaz gain jabeen informazioa (izen-abizenak, jabetza mota, eta abar) modu merkean erauzteko gai da.

Gutxiago irakurri

Ikertzaile nagusia:

Arantza Casillas

ikertzaileak:

Arantza Díaz de Ilarraza

Nerea Ezeiza

Iakes Goenaga

Koldo Gojenola

Oier Lopez de Lacalle

Maite Oronoz

Alicia Pérez

Olatz Perez de Viñaspre

domains_tabs

Demoak

Clinical entity and relation extraction in Spanish

Insert a text from the clinical domain and the systems will detect the disorders, drugs, body parts and procedures in it as well as adverse drug reactions and relations between disorders

Kontratuak

Proiektuak

Development Of Text-based Technology to support diagnosis, prevention and HEALTH institutions management
(2020 - 2023)
Trustworthy AI - Integrating Learning, Optimisation and Reasoning
(2020 - 2023)
European Language Equality
(2021 - 2022)
red estratégica para la promoción de las infraestructuras de tecnologías del lenguaje en ehumanidades y ciencias sociales
(2020 - 2021)
Testu klinikoak euskaratik eta euskarara egokitzeko itzultzaile automatiko baten garapena eta ezartzea
(2019 - 2021)
PROSA-MED: Advanced semantic textual processing for the detection of diagnostic codes, procedures, concepts and their relationships in health records
(2016 - 2019)
DETEAMI: Automatic detection of adverse drug effects in medical reports using natural language processing technologies.
(2015 - 2018)
Ixa Group. 'A' level research group (Basque Government)
(2016 - 2018)

All HiTZ projects

Patenteak

System to detect Spanish medical entities in the medical domain

Argitalpenak

Sara Santiso , Alicia Pérez, Arantza Casillas

Adverse Drug Reaction extraction: Tolerance to entity recognition errors and sub-domain variants (2021)

Computer Methods and Programs in Biomedicine. https://www.sciencedirect.com/science/article/pii/S0169260720317247?dgcid=author

Alberto Blanco, Olatz Perez de Viñaspre, Alicia Pérez, Arantza Casillas

Boosting ICD multi-label classification of health records with contextual embeddings and label-granularity (2020)

Computer Methods and Programs in Biomedicine, Volume 188, 105264

Rebecka Weegar, Alicia Pérez, Arantza Casillas, Maite Oronoz

Recent advances in Swedish and Spanish medical entity recognition in clinical texts using deep neural approaches (2020)

BMC Medical Informatics and Decision Making

Sara Santiso

Adverse Drug Reaction extraction on Electronic Health Records written in Spanish (2020)

Procesamiento del Lenguaje Natural http://journal.sepln.org/sepln/ojs/ojs/index.php/pln/article/view/6203

Sara Santiso, Alicia Pérez, Arantza Casillas, Maite Oronoz

Neural negated entity recognition in Spanish electronic health records (2020)

Journal of Biomedical Informatics (JBI) https://doi.org/10.1016/j.jbi.2020.103419

Alberto Blanco, Alicia Pérez, Arantza Casillas, Daniel Cobos

Extracting Cause of Death from Verbal Autopsy with Deep Learning interpretable methods (2020)

IEEE Journal of Biomedical and Health Informatics

Santana, S and Pérez, A and Casillas, A

HapLap at eHealth-KD Challenge 2020 (2020)

Proceedings of the Iberian Languages Evaluation Forum co-located with 36th Conference of the Spanish Society for Natural Language Processing, IberLEF@ SEPLN

Alberto Blanco, Alicia Pérez, Arantza Casillas

Extreme multi-label ICD classification: sensitivity to hospital service and time (2020)

IEEE Access, Volume 8, 183534-183545

Alberto Blanco, Alicia Pérez, Arantza Casillas

Automatic Classification of Medical Records with Multi-label Classifiers and Similarity Match Coders (2020)

CEUR Workshop Proceedings, Vol 2696 - Working Notes of CLEF 2020 - Conference and Labs of the Evaluation Forum

Kepa Sarasola, Iñaki Alegria, Olatz Perez de Viñaspre

Language Technology for Language Communities: An Overview based on Basque Experience 2020 (2020)file2 (2020)

Symposiwm Academaidd Technolegau Iaith Cymru 2020 -11-04 // Wales Academic Symposium on Language Technologies 2020-11-04

Iker de la Iglesia, Mikel Martinez-Puente, Alexander Platas, Iria San Miguel, Aitziber Atutxa, Koldo Gojenola

MEDIA team at the CLEF-2020 MultilingualInformation Extraction Task (2020)

Working Notes of CLEF 2020 - Conference and Labs of the Evaluation Forum Thessaloniki, Greece, September 22-25, 2020.

Rachel Bawden, Giorgio Maria Di Nunzio, Cristian Grozea, Inigo Jauregi Unanue, Antonio Jimeno Yepes, Nancy Mah, David Martinez, Aurélie Névéol, Mariana Neves, Maite Oronoz, Olatz Perez-de-Viñaspre, Massimo Piccardi, Roland Roller, Amy Siu, Philippe Thomas, Federica Vezzani, Maika Vicente Navarro, Dina Wiemann and Lana Yeganova

Findings of the WMT 2020 Biomedical Translation Shared Task: Basque, Italian and Russian as New Additional Languages (2020)

Fith Conference on Machine Translation (WMT20). Shared Task: Biomedical Translation Task

Sara Santiso, Alicia Pérez, Arantza Casillas

Smoothing dense spaces for improved relation extraction between drugs and adverse reactions (2019)

International Journal of Medical Informatics https://doi.org/10.1016/j.ijmedinf.2019.05.009

Aitziber Atutxa, Arantza Diaz de Ilarraza, koldo Gojenola,Maite Oronoz, Olatz Perez de Viñaspre

Interpretable Deep Learning to Map Diagnostic Texts to ICD10 Codes (2019)

International Journal of Medical Informatics https://doi.org/10.1016/j.ijmedinf.2019.05.015 Link to publication: https://authors.elsevier.com/c/1ZANI4xGJ~syOE

Arantza Casillas, Nerea Ezeiza, Iakes Goenaga, Alicia Pérez, Xabier Soto

Measuring the Effect of Different Types of Unsupervised Word Representations on Medical Named Entity Recognition (2019)

International Journal of Medical Informatics (https://doi.org/10.1016/j.ijmedinf.2019.05.022)

Alberto Blanco, Arantza Casillas, Alicia Pérez, Arantza Diaz de Ilarraza

Multi-label clinical document classification: Impact of label-density (2019)

Expert Systems with Applications, Volume 138, 112835

Olatz Perez-de-Viñaspre, Maite Oronoz, Natalia Elvira

KabiTermICD: Nested Term Based Translation of the ICD-10-CM into a Minor Language (2018)

Workshop "MultilingualBIO: Multilingual Biomedical Text Processing" of LREC 2018. Proceedings of the workshop. Miyazaki (Japan), 8th May 2018.

Jorge Pérez, Alicia Pérez, Arantza Casillas, Koldo Gojenola

Cardiology record multi-label classification using Latent Dirichlet Allocation (2018)

Computer Methods and Programs in Biomedicine https://doi.org/10.1016/j.cmpb.2018.07.002

Aitziber Atutxa, Arantza Casillas, Nerea Ezeiza, Iakes Goenaga, V. Fresno, Koldo Gojenola, R. Martinez, Maite Oronoz, Olatz Perez-de-Viñaspre

IxaMed at CLEF eHealth 2018 Task 1: ICD10 Coding with a Sequence-to-Sequence approach (2018)

CLEF 2018 Online Working Notes. CEUR-WS

Mikel Laburu, Alicia Pérez, Arantza Casillas, Iakes Goenaga, Maite Oronoz

Can I find information about rare diseases in some other language? (2018)

IEEE International Conference on Bioinformatics and Biomedicine. Artificial Intelligence techniques for Biomedicine and Healthcare. Madrid (December, 2018); ISBN: 978-1-5386-5487-3; Pgs: 2102-2108

All HiTZ publications

domains_tabs_full

Clinical entity and relation extraction in Spanish

Insert a text from the clinical domain and the systems will detect the disorders, drugs, body parts and procedures in it as well as adverse drug reactions and relations between disorders

Development Of Text-based Technology to support diagnosis, prevention and HEALTH institutions management
(2020 - 2023)
Trustworthy AI - Integrating Learning, Optimisation and Reasoning
(2020 - 2023)
European Language Equality
(2021 - 2022)
red estratégica para la promoción de las infraestructuras de tecnologías del lenguaje en ehumanidades y ciencias sociales
(2020 - 2021)
Testu klinikoak euskaratik eta euskarara egokitzeko itzultzaile automatiko baten garapena eta ezartzea
(2019 - 2021)
PROSA-MED: Advanced semantic textual processing for the detection of diagnostic codes, procedures, concepts and their relationships in health records
(2016 - 2019)
DETEAMI: Automatic detection of adverse drug effects in medical reports using natural language processing technologies.
(2015 - 2018)
Ixa Group. 'A' level research group (Basque Government)
(2016 - 2018)

All HiTZ projects

System to detect Spanish medical entities in the medical domain

Sara Santiso , Alicia Pérez, Arantza Casillas

Adverse Drug Reaction extraction: Tolerance to entity recognition errors and sub-domain variants (2021)

Computer Methods and Programs in Biomedicine. https://www.sciencedirect.com/science/article/pii/S0169260720317247?dgcid=author

Alberto Blanco, Olatz Perez de Viñaspre, Alicia Pérez, Arantza Casillas

Boosting ICD multi-label classification of health records with contextual embeddings and label-granularity (2020)

Computer Methods and Programs in Biomedicine, Volume 188, 105264

Rebecka Weegar, Alicia Pérez, Arantza Casillas, Maite Oronoz

Recent advances in Swedish and Spanish medical entity recognition in clinical texts using deep neural approaches (2020)

BMC Medical Informatics and Decision Making

Sara Santiso

Adverse Drug Reaction extraction on Electronic Health Records written in Spanish (2020)

Procesamiento del Lenguaje Natural http://journal.sepln.org/sepln/ojs/ojs/index.php/pln/article/view/6203

Sara Santiso, Alicia Pérez, Arantza Casillas, Maite Oronoz

Neural negated entity recognition in Spanish electronic health records (2020)

Journal of Biomedical Informatics (JBI) https://doi.org/10.1016/j.jbi.2020.103419

Alberto Blanco, Alicia Pérez, Arantza Casillas, Daniel Cobos

Extracting Cause of Death from Verbal Autopsy with Deep Learning interpretable methods (2020)

IEEE Journal of Biomedical and Health Informatics

Santana, S and Pérez, A and Casillas, A

HapLap at eHealth-KD Challenge 2020 (2020)

Proceedings of the Iberian Languages Evaluation Forum co-located with 36th Conference of the Spanish Society for Natural Language Processing, IberLEF@ SEPLN

Alberto Blanco, Alicia Pérez, Arantza Casillas

Extreme multi-label ICD classification: sensitivity to hospital service and time (2020)

IEEE Access, Volume 8, 183534-183545

Alberto Blanco, Alicia Pérez, Arantza Casillas

Automatic Classification of Medical Records with Multi-label Classifiers and Similarity Match Coders (2020)

CEUR Workshop Proceedings, Vol 2696 - Working Notes of CLEF 2020 - Conference and Labs of the Evaluation Forum

Kepa Sarasola, Iñaki Alegria, Olatz Perez de Viñaspre

Language Technology for Language Communities: An Overview based on Basque Experience 2020 (2020)file2 (2020)

Symposiwm Academaidd Technolegau Iaith Cymru 2020 -11-04 // Wales Academic Symposium on Language Technologies 2020-11-04

Iker de la Iglesia, Mikel Martinez-Puente, Alexander Platas, Iria San Miguel, Aitziber Atutxa, Koldo Gojenola

MEDIA team at the CLEF-2020 MultilingualInformation Extraction Task (2020)

Working Notes of CLEF 2020 - Conference and Labs of the Evaluation Forum Thessaloniki, Greece, September 22-25, 2020.

Findings of the WMT 2020 Biomedical Translation Shared Task: Basque, Italian and Russian as New Additional Languages (2020)

Fith Conference on Machine Translation (WMT20). Shared Task: Biomedical Translation Task

Sara Santiso, Alicia Pérez, Arantza Casillas

Smoothing dense spaces for improved relation extraction between drugs and adverse reactions (2019)

International Journal of Medical Informatics https://doi.org/10.1016/j.ijmedinf.2019.05.009

Aitziber Atutxa, Arantza Diaz de Ilarraza, koldo Gojenola,Maite Oronoz, Olatz Perez de Viñaspre

Interpretable Deep Learning to Map Diagnostic Texts to ICD10 Codes (2019)

International Journal of Medical Informatics https://doi.org/10.1016/j.ijmedinf.2019.05.015 Link to publication: https://authors.elsevier.com/c/1ZANI4xGJ~syOE

Arantza Casillas, Nerea Ezeiza, Iakes Goenaga, Alicia Pérez, Xabier Soto

Measuring the Effect of Different Types of Unsupervised Word Representations on Medical Named Entity Recognition (2019)

International Journal of Medical Informatics (https://doi.org/10.1016/j.ijmedinf.2019.05.022)

Alberto Blanco, Arantza Casillas, Alicia Pérez, Arantza Diaz de Ilarraza

Multi-label clinical document classification: Impact of label-density (2019)

Expert Systems with Applications, Volume 138, 112835

Olatz Perez-de-Viñaspre, Maite Oronoz, Natalia Elvira

KabiTermICD: Nested Term Based Translation of the ICD-10-CM into a Minor Language (2018)

Workshop "MultilingualBIO: Multilingual Biomedical Text Processing" of LREC 2018. Proceedings of the workshop. Miyazaki (Japan), 8th May 2018.

Jorge Pérez, Alicia Pérez, Arantza Casillas, Koldo Gojenola

Cardiology record multi-label classification using Latent Dirichlet Allocation (2018)

Computer Methods and Programs in Biomedicine https://doi.org/10.1016/j.cmpb.2018.07.002

Aitziber Atutxa, Arantza Casillas, Nerea Ezeiza, Iakes Goenaga, V. Fresno, Koldo Gojenola, R. Martinez, Maite Oronoz, Olatz Perez-de-Viñaspre

IxaMed at CLEF eHealth 2018 Task 1: ICD10 Coding with a Sequence-to-Sequence approach (2018)

CLEF 2018 Online Working Notes. CEUR-WS

Mikel Laburu, Alicia Pérez, Arantza Casillas, Iakes Goenaga, Maite Oronoz

Can I find information about rare diseases in some other language? (2018)

IEEE International Conference on Bioinformatics and Biomedicine. Artificial Intelligence techniques for Biomedicine and Healthcare. Madrid (December, 2018); ISBN: 978-1-5386-5487-3; Pgs: 2102-2108

All HiTZ publications

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Medikuntza arloko eta arlo juridikoko hizkuntzaren prozesamendua

domains_tabs

System to detect Spanish medical entities in the medical domain

Adverse Drug Reaction extraction: Tolerance to entity recognition errors and sub-domain variants (2021)

Boosting ICD multi-label classification of health records with contextual embeddings and label-granularity (2020)

Recent advances in Swedish and Spanish medical entity recognition in clinical texts using deep neural approaches (2020)

Adverse Drug Reaction extraction on Electronic Health Records written in Spanish (2020)

Neural negated entity recognition in Spanish electronic health records (2020)

Extracting Cause of Death from Verbal Autopsy with Deep Learning interpretable methods (2020)

HapLap at eHealth-KD Challenge 2020 (2020)

Extreme multi-label ICD classification: sensitivity to hospital service and time (2020)

Automatic Classification of Medical Records with Multi-label Classifiers and Similarity Match Coders (2020)

Findings of the WMT 2020 Biomedical Translation Shared Task: Basque, Italian and Russian as New Additional Languages (2020)

Smoothing dense spaces for improved relation extraction between drugs and adverse reactions (2019)

Interpretable Deep Learning to Map Diagnostic Texts to ICD10 Codes (2019)

Multi-label clinical document classification: Impact of label-density (2019)

KabiTermICD: Nested Term Based Translation of the ICD-10-CM into a Minor Language (2018)

Cardiology record multi-label classification using Latent Dirichlet Allocation (2018)

domains_tabs_full

System to detect Spanish medical entities in the medical domain

Adverse Drug Reaction extraction: Tolerance to entity recognition errors and sub-domain variants (2021)

Boosting ICD multi-label classification of health records with contextual embeddings and label-granularity (2020)

Recent advances in Swedish and Spanish medical entity recognition in clinical texts using deep neural approaches (2020)

Adverse Drug Reaction extraction on Electronic Health Records written in Spanish (2020)

Neural negated entity recognition in Spanish electronic health records (2020)

Extracting Cause of Death from Verbal Autopsy with Deep Learning interpretable methods (2020)

HapLap at eHealth-KD Challenge 2020 (2020)

Extreme multi-label ICD classification: sensitivity to hospital service and time (2020)

Automatic Classification of Medical Records with Multi-label Classifiers and Similarity Match Coders (2020)

Findings of the WMT 2020 Biomedical Translation Shared Task: Basque, Italian and Russian as New Additional Languages (2020)

Smoothing dense spaces for improved relation extraction between drugs and adverse reactions (2019)

Interpretable Deep Learning to Map Diagnostic Texts to ICD10 Codes (2019)

Multi-label clinical document classification: Impact of label-density (2019)

KabiTermICD: Nested Term Based Translation of the ICD-10-CM into a Minor Language (2018)

Cardiology record multi-label classification using Latent Dirichlet Allocation (2018)

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