Arantza Casillas
Medikuntza arloko eta arlo juridikoko hizkuntzaren prozesamendua
Osasunaren eta legearen domeinuak
Hizkuntza prozesatzeko teknikak domeinu zehatzetara eramaten direnean, osasunaren eta legearen domeinuetara adibidez, hainbat egokitzapen behar izaten dira testu horien berezitasunak modu egokian jasotzeko.
Osasunaren domeinuan Galdakaoko-Usansoloko Ospitalearekin 2010ean hasi ginen elkarlanean Gaixotasunen Nazioarteko Sailkapenaren (GNS) kodeketa automatikoa hobetzen. Orduz geroztik, eta beti ere pazienteari em...Gehiago Irakurri
Ikertzaile nagusia:
ikertzaileak:
domains_tabs
Demoak
Clinical entity and relation extraction in Spanish
Insert a text from the clinical domain and the systems will detect the disorders, drugs, body parts and procedures in it as well as adverse drug reactions and relations between disorders
Kontratuak
Acquisition of the necessary update of the software Itzulbide for the translation of clinical texts from Basque to Spanish
(2023 - 2025)- Extracción de información de instrumentos PRO
(2021 - 2022) - TENDER-2021-PERINATAL
(2021 - 2022) 
Testu klinikoak euskaratik eta euskarara egokitzeko itzultzaile automatiko baten garapena eta ezartzea
(2019 - 2021)
Data Privacy in Artificial Intelligence for Health Applications: A QA system to extract specific information from medical reports that can be used for better decision making
(2020 - 2021)
Proiektuak
Antidote (PCI2020-120717-2) funded by MCIN/AEI /10.13039/501100011033 and by European Union NextGenerationEU/PRTR
(2021 - 2024)- LOTU: Analysis of psycho-linguistic features for early detection of changes in social media about LOneliness and isolation perception employing deep naTUral language understanding
LOTU: Analysis of psycho-linguistic features for early detection of changes in social media about LOneliness and isolation perception employing deep naTUral language understanding
(2022 - 2024) 
Development Of Text-based Technology to support diagnosis, prevention and HEALTH institutions management
(2020 - 2023)- EXtracción de entidades médicas y creación de líneas TEmporales basadas en técnicas de Procesamiento del Lenguaje Natural aplicadas a la historia clínica del PAciente (EXTEPA)
(2022 - 2023) 
PROSA-MED: Advanced semantic textual processing for the detection of diagnostic codes, procedures, concepts and their relationships in health records
(2016 - 2019)
DETEAMI: Automatic detection of adverse drug effects in medical reports using natural language processing technologies.
(2015 - 2018) All HiTZ projects
Patenteak
Argitalpenak
Anastasia Klimovich-Gray, Giovanni Di Liberto, Lucia Amoruso, Ander Barrena, Eneko Agirre, Nicola Molinaro
Increased top-down semantic processing in natural speech linked to better reading in dyslexia (2023)
NeuroImage
Sara Gracia, Maite Oronoz, Alicia Pérez
Ideiagintza suizidaren identifikazioa sare sozialetan (2023)
IKERGAZTE NAZIOARTEKO IKERKETA EUSKARAZ. UEU. 2023ko maiatzaren 17,18 eta 19. Donostia
Paula Ontalvilla, Aitziber Atutxa, Maite Oronoz
Osasun-arloko entitate izendunen etiketatzea (2023)
IkerGazte 2023- Ikertzaile Euskaldunen Bosgarren kongresua (https://ikergazte.ueu.eus/)
Naiara Perez Miguel
Contributions to Information Extraction for Spanish Written Biomedical Text (2023)
-
Alicia Pérez, Maite Oronoz, Juan Martinez-Romo, Lourdes Araujo
OBSER-MENH: Digital OBSERvatory of MENtal Health in social networks for Healthcare Institutions based on Language Technologies (2023)
Accepted (not published). Proceedings of the Annual Conference of the Spanish Association for Natural Language Processing: Projects and Demonstrations (SEPLN-PD 2023) co-located with the Conference of the Spanish Society for Natural Language Processing (SEPLN 2023)
Iakes Goenaga, Edgar Andrés, Koldo Gojenola, Aitziber Atutxa
Advances in Monolingual and Crosslingual Automatic Disability Annotation in Spanish (2023)
BMC Bioinformatics volume 24, Article number: 265
Xabier Larrayoz, Nuria Lebeña, Arantza Casillas, Alicia Pérez
Representation exploration and Deep learning applied to the early detection of pathological gambling risks (2023)
Accepted. Experimental IR Meets Multilinguality, Multimodality, and Interaction: 14th International Conference of the CLEF Association, CLEF 2023, Springer International Publishing, Thessaloniki, Greece.
Juan Martinez-Romo, Lourdes Araujo, Xabier Larrayoz, Maite Oronoz, Alicia Pérez
OBSER-MENH at eRisk 2023: Deep Learning-Based Approaches for Symptom Detection in Depression and Early Identification of Pathological Gambling Indicators (2023)
Accepted. Experimental IR Meets Multilinguality, Multimodality, and Interaction: 14th International Conference of the CLEF Association, CLEF 2023, Springer International Publishing, Thessaloniki, Greece.
Xabier Larrayoz, Nuria Lebeña, Arantza Casillas, Alicia Pérez
Eating Disorders Detection by means of Deep Learning (2023)
Accepted. MentalRiskES at IberLEF 2023: Early Detection of Mental Disorders Risk in Spanish
Iker de la Iglesia, María Vivó, Paula Chocrón, Gabriel de Maeztu, Koldo Gojenola, Aitziber Atutxa
An Open Source Corpus and Automatic Tool for Section Identification in Spanish Health Records (2023)
Journal of Biomedical Informatics
Ander Cejudo, Arantza Casillas, Alicia Pérez, Maite Oronoz, Daniel Cobos
Cause of Death estimation from Verbal Autopsies: Is the Open Response redundant or synergistic? (2023)
Artificial Intelligence In Medicine
Jordan Koontz, Maite Oronoz and Alicia Pérez
Evaluating Data Augmentation for Medication Identification in Clinical Notes (2023)
International Conference on Recent Advances in Natural Language Processing (RANLP) (Accepted)
Owen Trigueros, Alberto Blanco, Nuria Lebeña, Arantza Casillas, Alicia Pérez
Explainable ICD multi-label classification of EHRs in Spanish with convolutional attention (2022)
International Journal of Medical Informatics
Alberto Blanco, Alicia Pérez, Arantza Casillas
Exploiting ICD Hierarchy for Classification of EHRs in Spanish Through Multi-Task Transformers (2022)
IEEE Journal of Biomedical and Health Informatics
Alberto Blanco, Sonja Remmer, Alicia Pérez, Hercules Dalianis, Arantza Casillas
Implementation of specialised attention mechanisms: ICD-10 classification of Gastrointestinal discharge summaries in English, Spanish and Swedish (2022)
Journal of Biomedical Informatics
Xabier Soto, Olatz Pérez-de-Viñaspre, Maite Oronoz, Gorka Labaka
Development of a Machine Translation system for promoting the use of a low resource language in the clinical domain: the case of Basque. (2022)
Chapter 7 In Natural Language Processing In Healthcare A Special Focus on Low Resource Languages. Routledge, Taylor & Francis Group.
Itxaso Alayo, Ander Merketegi, Maite Oronoz, Arantza Casillas, Alicia Pérez, Olatz Garin, Isabel Moreira, Montse Ferrer, Jordi Alonso, Yolanda Pardo
A baseline model for the automation of the systematic review of Patient-Reported Outcomes measures: the case of the BiblioPRO virtual library (2022)
Jornada científica CIBERESP 2022 (https://jornadacientifica.ciberesp.es/). Centro de Investigación Biomédica en Red, Epidemiología y Salud Pública.
Nuria Lebeña, Alberto Blanco, Alicia Pérez, Arantza Casillas
Preliminary exploration of topic modelling representations for Electronic Health Records coding according to the International Classification of Diseases in Spanish (2022)
Expert Systems with Applications
Gildo Fabregat Ander Cejudo Juan Martinez-Romo Alicia Pérez Lourdes Araujo Nuria Lebeña Maite Oronoz Arantza Casillas
Approximate Nearest Neighbour Extraction Techniques and Neural Networks for Suicide Risk Prediction in the CLPsych 2022 Shared Task (2022)
CLPsych 2022 Shared Task, Accepted in CLPsych 2022 Shared Task, July 15th 2022
Bernardo Magnini, Begoña Altuna, Alberto Lavelli, Anne-Lyse Minard, Manuela Speranza, and Roberto Zanoli
European Clinical Case Corpus (2022)
Bernardo Magnini, Begoña Altuna, Alberto Lavelli, Anne-Lyse Minard, Manuela Speranza, and Roberto Zanoli (2022). European Clinical Case Corpus. Georg Rehm ed. European Language Grid, A Language Technology Platform for Multilingual Europe. Springer, Cham, Switzerland. https://doi.org/10.1007/978-3-031-17258-8
A Garcia Olea, I Valdelvira Vazquez, I Diez Gonzalez, A Atutxa Salazar, K Gojenola Galletebeitia, J M Ormaetxe Merodio
Prediction of new onset atrial fibrillation recurrence or persistence with artificial intelligence: first insights of the PRAFAI study (2022)
European Heart Journal - Digital Health, Volume 3, Issue 4, December 2022,
Alberto Blanco
Extreme multi-label deep neural classification of Spanish health records according to the International Classification of Diseases (2022)
Thesis
Sara Santiso , Alicia Pérez, Arantza Casillas
Adverse Drug Reaction extraction: Tolerance to entity recognition errors and sub-domain variants (2021)
Computer Methods and Programs in Biomedicine. https://www.sciencedirect.com/science/article/pii/S0169260720317247?dgcid=author
Sara Santiso
Adverse Drug Reaction extraction on Electronic Health Records written in Spanish: A PhD Thesis overview (2021)
IberSPEECH 2020 https://www.isca-speech.org/archive_v0/IberSPEECH_2021/pdfs/34.pdf
Iakes Goenaga, Xabier Lahuerta, Aitziber Atutxa, Koldo Gojenola
A Section Identification Tool: towards HL7 CDA/CCR Standardization in Spanish Discharge Summaries (2021)
Journal of Biomedical Informatics
Prys Delyth, Sarasola Kepa, Alegria Iñaki, Perez-de-Viñaspre Olatz, Palmer Geraint, Corcoran Padraig, Arman Laura, Knight Dawn ,Spasic Irena, Bryn Jones Dewi, Cooper Sarah, Prys Myfyr, Muralidaran Vigneshwaran, O’Hare Keeziah, Prys Gruffudd, Watkins Gareth, Roberts Jonathan C, Butcher Peter W. S., Lew Robert, Rees Geraint, Sharma Nirwan, Frankenberg-Garcia Ana, Farhat Leena Sarah, Teahan William John.
Language and Technology in Wales: Volume I (2021)
Language and Technology in Wales: Volume I. University of Bangor. ISBN: 978-1-84220-189-3
Prys Delyth, Sarasola Kepa, Alegria Iñaki, Perez-de-Viñaspre Olatz, Palmer Geraint, Corcoran Padraig, Arman Laura, Knight Dawn ,Spasic Irena, Bryn Jones Dewi, Cooper Sarah, Prys Myfyr, Muralidaran Vigneshwaran, O’Hare Keeziah, Prys Gruffudd, Watkins Gareth, Roberts Jonathan C, Butcher Peter W. S., Lew Robert, Rees Geraint, Sharma Nirwan, Frankenberg-Garcia Ana, Farhat Leena Sarah, Teahan William John.
Iaith a Thechnoleg yng Nghymru: Cyfrol 1 (2021)
Iaith a Thechnoleg yng Nghymru: Cyfrol 1. University of Bangor. ISBN: 978-1-84220-189-6
Alberto Blanco, Sonja Remmer, Alicia Pérez, Hercules Dalianis, Arantza Casillas
On the Contribution of Per-ICD Attention Mechanisms to Classify Health Records in Languages With Fewer Resources than English (2021)
Proceedings of the International Conference on Recent Advances in Natural Language Processing, RANLP 2021, Varna, Bulgaria, September 1-3, 2021. Deep Learning for Natural Language Processing Methods and Applications.
Ander Cejudo, Owen Trigueros, Alicia Pérez, Arantza Casillas, Daniel Cobos
Verbal Autopsy: First Steps Towards Questionnaire Reduction (2021)
Ekštein K., Pártl F., Konopík M. Text, Speech, and Dialogue. TSD 2021. Lecture Notes in Computer Science, vol 12848. Springer, Cham.
Sergio Santana, Alicia Pérez, Arantza Casillas, Maite Oronoz
Erlazio-erauzketa testu klinikoetan hizkuntzaren prozesamenduaren bidez (2021)
IV. IKERGAZTE NAZIOARTEKO IKERKETA EUSKARAZ. UEU
Beatriz Pereda-Goikoetxea, María Isabel Elorza-Puyadena Mikel Lersundi-Ayestaran Joseba Xabier Huitzi-Egilegor María José Uranga-Iturrioz Blanca Marín-Fernández
Emakumeen emozio-zurrunbiloa erditzean (2021)
Ekaia, 2021, 41, 31-48
Bernardo Magnini, Begoña Altuna, Alberto Lavelli, Manuela Speranza, Roberto Zanoli
The E3C Project: European Clinical Case Corpus (2021)
Proceedings of the Annual Conference of the Spanish Association for Natural Language Processing: Projects and Demonstrations (SEPLN-PD 2021). Pages 17-20. ISSN: 1613-0073. URL: http://ceur-ws.org/Vol-2968/paper5.pdf
Lana Yeganova, Dina Wiemann, Mariana Neves, Federica Vezzani, Amy Siu, Inigo Jauregi Unanue, Maite Oronoz, Nancy Mah, Aurélie Névéol, David Martinez, Rachel Bawden, Giorgio Maria Di Nunzio, Roland Roller, Philippe Thomas, Cristian Grozea, Olatz Perez-de-Viñaspre, Maika Vicente Navarro, and Antonio Jimeno Yepes
Findings of the WMT 2021 Biomedical Translation Shared Task: Summaries of Animal Experiments as New Test Set (2021)
In Proceedings of the Sixth Conference on Machine Translation, pages 664–683, Online. Association for Computational Linguistics.
Olea, AG; Merodio, JMO ; Atutxa Salazar, A.; Gonzalez, ID; De La Prieta, IF; Rada, MM; De Luis, EA ; Alzaga, KU; Rodriguez, UI; Lili, IP; Rodriguez, AR; Izaguirre, AL; Urizar, RC; Alcalde, MC; Gojenola Galletebeitia, K.
The role of congestive heart failure at atrial fibrillation onset in the data entry errors of electronic health records (2021)
EUROPEAN JOURNAL OF HEART FAILURE. Volume 23 Page 303-304 Supplement 2. SEP 2021. Document Type: Meeting Abstract
Alberto Blanco, Olatz Perez de Viñaspre, Alicia Pérez, Arantza Casillas
Boosting ICD multi-label classification of health records with contextual embeddings and label-granularity (2020)
Computer Methods and Programs in Biomedicine, Volume 188, 105264
Rebecka Weegar, Alicia Pérez, Arantza Casillas, Maite Oronoz
Recent advances in Swedish and Spanish medical entity recognition in clinical texts using deep neural approaches (2020)
BMC Medical Informatics and Decision Making
Sara Santiso
Adverse Drug Reaction extraction on Electronic Health Records written in Spanish (2020)
Procesamiento del Lenguaje Natural http://journal.sepln.org/sepln/ojs/ojs/index.php/pln/article/view/6203
Sara Santiso, Alicia Pérez, Arantza Casillas, Maite Oronoz
Neural negated entity recognition in Spanish electronic health records (2020)
Journal of Biomedical Informatics (JBI) https://doi.org/10.1016/j.jbi.2020.103419
Alberto Blanco, Alicia Pérez, Arantza Casillas, Daniel Cobos
Extracting Cause of Death from Verbal Autopsy with Deep Learning interpretable methods (2020)
IEEE Journal of Biomedical and Health Informatics
Santana, S and Pérez, A and Casillas, A
HapLap at eHealth-KD Challenge 2020 (2020)
Proceedings of the Iberian Languages Evaluation Forum co-located with 36th Conference of the Spanish Society for Natural Language Processing, IberLEF@ SEPLN
Alberto Blanco, Alicia Pérez, Arantza Casillas
Extreme multi-label ICD classification: sensitivity to hospital service and time (2020)
IEEE Access, Volume 8, 183534-183545
Alberto Blanco, Alicia Pérez, Arantza Casillas
Automatic Classification of Medical Records with Multi-label Classifiers and Similarity Match Coders (2020)
CEUR Workshop Proceedings, Vol 2696 - Working Notes of CLEF 2020 - Conference and Labs of the Evaluation Forum
Kepa Sarasola, Iñaki Alegria, Olatz Perez de Viñaspre
Language Technology for Language Communities: An Overview based on Basque Experience 2020 (2020)file2 (2020)
Symposiwm Academaidd Technolegau Iaith Cymru 2020 -11-04 // Wales Academic Symposium on Language Technologies 2020-11-04
Iker de la Iglesia, Mikel Martinez-Puente, Alexander Platas, Iria San Miguel, Aitziber Atutxa, Koldo Gojenola
MEDIA team at the CLEF-2020 MultilingualInformation Extraction Task (2020)
Working Notes of CLEF 2020 - Conference and Labs of the Evaluation Forum Thessaloniki, Greece, September 22-25, 2020.
Rachel Bawden, Giorgio Maria Di Nunzio, Cristian Grozea, Inigo Jauregi Unanue, Antonio Jimeno Yepes, Nancy Mah, David Martinez, Aurélie Névéol, Mariana Neves, Maite Oronoz, Olatz Perez-de-Viñaspre, Massimo Piccardi, Roland Roller, Amy Siu, Philippe Thomas, Federica Vezzani, Maika Vicente Navarro, Dina Wiemann and Lana Yeganova
Findings of the WMT 2020 Biomedical Translation Shared Task: Basque, Italian and Russian as New Additional Languages (2020)
Fith Conference on Machine Translation (WMT20). Shared Task: Biomedical Translation Task
Bernardo Magnini, Begoña Altuna, Alberto Lavelli, Manuela Speranza, Roberto Zanoli
The E3C Project:Collection and Annotation of a Multilingual Corpus of Clinical Cases (2020)
In Johanna Monti, Felice Dell'Orletta and Fabio Tamburini (eds.), Proceedings of the Seventh Italian Conference on Computational Linguistics. Associazione Italiana di Linguistica Computazionale. Bologna, Italy, 2020.
Lima S., Pérez-Miguel N., Cuadros M. and Rigau G.
NUBes: A Corpus of Negation and Uncertainty in Spanish Clinical Texts. (2020)
Proceedings of the 12th Language Resources and Evaluation Conference (LREC'20). Marseille, France. 2020.
Perez, N; Accuosto, P; Bravo, A; Quadres, M; Martinez-Garcia, E; Saggion, H; Rigau, G.
Cross-lingual semantic annotation of Biomedical literature: experiments in Spanish and English (2020)
Bioinformatics, 36, 6, 1872-1880. , ISSN 1367-1880
Sara Santiso, Alicia Pérez, Arantza Casillas
Smoothing dense spaces for improved relation extraction between drugs and adverse reactions (2019)
International Journal of Medical Informatics https://doi.org/10.1016/j.ijmedinf.2019.05.009
Aitziber Atutxa, Arantza Diaz de Ilarraza, koldo Gojenola,Maite Oronoz, Olatz Perez de Viñaspre
Interpretable Deep Learning to Map Diagnostic Texts to ICD10 Codes (2019)
International Journal of Medical Informatics https://doi.org/10.1016/j.ijmedinf.2019.05.015 Link to publication: https://authors.elsevier.com/c/1ZANI4xGJ~syOE
Arantza Casillas, Nerea Ezeiza, Iakes Goenaga, Alicia Pérez, Xabier Soto
Measuring the Effect of Different Types of Unsupervised Word Representations on Medical Named Entity Recognition (2019)
International Journal of Medical Informatics, Volume 129, September 2019, Pages 100-106.
Alberto Blanco, Arantza Casillas, Alicia Pérez, Arantza Diaz de Ilarraza
Multi-label clinical document classification: Impact of label-density (2019)
Expert Systems with Applications, Volume 138, 112835
Olatz Perez-de-Viñaspre, Maite Oronoz, Natalia Elvira
KabiTermICD: Nested Term Based Translation of the ICD-10-CM into a Minor Language (2018)
Workshop "MultilingualBIO: Multilingual Biomedical Text Processing" of LREC 2018. Proceedings of the workshop. Miyazaki (Japan), 8th May 2018.
Rebecka Weegar, Alicia Pérez, Hercules Dalianis, Koldo Gojenola, Arantza Casillas, Maite Oronoz
Ensembles for clinical entity extraction (2018)
Revista: Procesamiento del Lenguaje Natural, Vol 60, p. 13-20, mar. 2018. ISSN 1989-7553. DOI 10.26342/2018-60-1
Igone Zabala
Euskararen lantze funtzionala eta profesionalen komunikazio-gaitasunen garapena osasun-alorrean (2018)
BAT Soziolinguistika Aldizkaria 108, 2018 (3): 11-34
Jorge Pérez, Alicia Pérez, Arantza Casillas, Koldo Gojenola
Cardiology record multi-label classification using Latent Dirichlet Allocation (2018)
Computer Methods and Programs in Biomedicine https://doi.org/10.1016/j.cmpb.2018.07.002
Aitziber Atutxa, Arantza Casillas, Nerea Ezeiza, Iakes Goenaga, V. Fresno, Koldo Gojenola, R. Martinez, Maite Oronoz, Olatz Perez-de-Viñaspre
IxaMed at CLEF eHealth 2018 Task 1: ICD10 Coding with a Sequence-to-Sequence approach (2018)
CLEF 2018 Online Working Notes. CEUR-WS
Mikel Laburu, Alicia Pérez, Arantza Casillas, Iakes Goenaga, Maite Oronoz
Can I find information about rare diseases in some other language? (2018)
IEEE International Conference on Bioinformatics and Biomedicine. Artificial Intelligence techniques for Biomedicine and Healthcare. Madrid (December, 2018); ISBN: 978-1-5386-5487-3; Pgs: 2102-2108
Aitziber Atutxa, Alicia Pérez, Arantza Casillas
Machine Learning approaches on Diagnostic Term Encoding with the ICD for Clinical Documentation (2017)
IEEE Journal of Biomedical and Health Informatics, issue 99
Zabala I., San Martin I., Lersundi M.
Learning terminology in order to become an active agent in the development of Basque biomedical registers (2016)
Language Learning in Higher Education. Journal of CercleS (European Confederation of Language Centres in Higher Education). De Gruyter Mouton. Volume 6, Issue 1 (May 2016). Special issue: Teaching Medical Discourse in Higher Education. ISSN (Online) 2191-6128, ISSN (Print) 2191-611X, DOI: 10.1515/cercles-2016-0007 URL: http://www.degruyter.com/view/j/cercles.2016.6.issue-1/cercles-2016-0007/cercles-2016-0007.xml
Zabala I., San Martin I., Lersundi M., Azkue J. J., Mendizabal J.L.
The Elaboration of Human Anatomy Terminology for the Basque Language: the Contribution of Translators, Linguists and Experts (2012)
Terminàlia Vol. 6: 15-25
domains_tabs_full
Clinical entity and relation extraction in Spanish
Insert a text from the clinical domain and the systems will detect the disorders, drugs, body parts and procedures in it as well as adverse drug reactions and relations between disorders
Acquisition of the necessary update of the software Itzulbide for the translation of clinical texts from Basque to Spanish
(2023 - 2025)- Extracción de información de instrumentos PRO
(2021 - 2022) - TENDER-2021-PERINATAL
(2021 - 2022)
Testu klinikoak euskaratik eta euskarara egokitzeko itzultzaile automatiko baten garapena eta ezartzea
(2019 - 2021)
Data Privacy in Artificial Intelligence for Health Applications: A QA system to extract specific information from medical reports that can be used for better decision making
(2020 - 2021)
Antidote (PCI2020-120717-2) funded by MCIN/AEI /10.13039/501100011033 and by European Union NextGenerationEU/PRTR
(2021 - 2024)- LOTU: Analysis of psycho-linguistic features for early detection of changes in social media about LOneliness and isolation perception employing deep naTUral language understanding
LOTU: Analysis of psycho-linguistic features for early detection of changes in social media about LOneliness and isolation perception employing deep naTUral language understanding
(2022 - 2024)
Development Of Text-based Technology to support diagnosis, prevention and HEALTH institutions management
(2020 - 2023)- EXtracción de entidades médicas y creación de líneas TEmporales basadas en técnicas de Procesamiento del Lenguaje Natural aplicadas a la historia clínica del PAciente (EXTEPA)
(2022 - 2023)
PROSA-MED: Advanced semantic textual processing for the detection of diagnostic codes, procedures, concepts and their relationships in health records
(2016 - 2019)
DETEAMI: Automatic detection of adverse drug effects in medical reports using natural language processing technologies.
(2015 - 2018) All HiTZ projects
Anastasia Klimovich-Gray, Giovanni Di Liberto, Lucia Amoruso, Ander Barrena, Eneko Agirre, Nicola Molinaro
Increased top-down semantic processing in natural speech linked to better reading in dyslexia (2023)
NeuroImage
Sara Gracia, Maite Oronoz, Alicia Pérez
Ideiagintza suizidaren identifikazioa sare sozialetan (2023)
IKERGAZTE NAZIOARTEKO IKERKETA EUSKARAZ. UEU. 2023ko maiatzaren 17,18 eta 19. Donostia
Paula Ontalvilla, Aitziber Atutxa, Maite Oronoz
Osasun-arloko entitate izendunen etiketatzea (2023)
IkerGazte 2023- Ikertzaile Euskaldunen Bosgarren kongresua (https://ikergazte.ueu.eus/)
Naiara Perez Miguel
Contributions to Information Extraction for Spanish Written Biomedical Text (2023)
-
Alicia Pérez, Maite Oronoz, Juan Martinez-Romo, Lourdes Araujo
OBSER-MENH: Digital OBSERvatory of MENtal Health in social networks for Healthcare Institutions based on Language Technologies (2023)
Accepted (not published). Proceedings of the Annual Conference of the Spanish Association for Natural Language Processing: Projects and Demonstrations (SEPLN-PD 2023) co-located with the Conference of the Spanish Society for Natural Language Processing (SEPLN 2023)
Iakes Goenaga, Edgar Andrés, Koldo Gojenola, Aitziber Atutxa
Advances in Monolingual and Crosslingual Automatic Disability Annotation in Spanish (2023)
BMC Bioinformatics volume 24, Article number: 265
Xabier Larrayoz, Nuria Lebeña, Arantza Casillas, Alicia Pérez
Representation exploration and Deep learning applied to the early detection of pathological gambling risks (2023)
Accepted. Experimental IR Meets Multilinguality, Multimodality, and Interaction: 14th International Conference of the CLEF Association, CLEF 2023, Springer International Publishing, Thessaloniki, Greece.
Juan Martinez-Romo, Lourdes Araujo, Xabier Larrayoz, Maite Oronoz, Alicia Pérez
OBSER-MENH at eRisk 2023: Deep Learning-Based Approaches for Symptom Detection in Depression and Early Identification of Pathological Gambling Indicators (2023)
Accepted. Experimental IR Meets Multilinguality, Multimodality, and Interaction: 14th International Conference of the CLEF Association, CLEF 2023, Springer International Publishing, Thessaloniki, Greece.
Xabier Larrayoz, Nuria Lebeña, Arantza Casillas, Alicia Pérez
Eating Disorders Detection by means of Deep Learning (2023)
Accepted. MentalRiskES at IberLEF 2023: Early Detection of Mental Disorders Risk in Spanish
Iker de la Iglesia, María Vivó, Paula Chocrón, Gabriel de Maeztu, Koldo Gojenola, Aitziber Atutxa
An Open Source Corpus and Automatic Tool for Section Identification in Spanish Health Records (2023)
Journal of Biomedical Informatics
Ander Cejudo, Arantza Casillas, Alicia Pérez, Maite Oronoz, Daniel Cobos
Cause of Death estimation from Verbal Autopsies: Is the Open Response redundant or synergistic? (2023)
Artificial Intelligence In Medicine
Jordan Koontz, Maite Oronoz and Alicia Pérez
Evaluating Data Augmentation for Medication Identification in Clinical Notes (2023)
International Conference on Recent Advances in Natural Language Processing (RANLP) (Accepted)
Owen Trigueros, Alberto Blanco, Nuria Lebeña, Arantza Casillas, Alicia Pérez
Explainable ICD multi-label classification of EHRs in Spanish with convolutional attention (2022)
International Journal of Medical Informatics
Alberto Blanco, Alicia Pérez, Arantza Casillas
Exploiting ICD Hierarchy for Classification of EHRs in Spanish Through Multi-Task Transformers (2022)
IEEE Journal of Biomedical and Health Informatics
Alberto Blanco, Sonja Remmer, Alicia Pérez, Hercules Dalianis, Arantza Casillas
Implementation of specialised attention mechanisms: ICD-10 classification of Gastrointestinal discharge summaries in English, Spanish and Swedish (2022)
Journal of Biomedical Informatics
Xabier Soto, Olatz Pérez-de-Viñaspre, Maite Oronoz, Gorka Labaka
Development of a Machine Translation system for promoting the use of a low resource language in the clinical domain: the case of Basque. (2022)
Chapter 7 In Natural Language Processing In Healthcare A Special Focus on Low Resource Languages. Routledge, Taylor & Francis Group.
Itxaso Alayo, Ander Merketegi, Maite Oronoz, Arantza Casillas, Alicia Pérez, Olatz Garin, Isabel Moreira, Montse Ferrer, Jordi Alonso, Yolanda Pardo
A baseline model for the automation of the systematic review of Patient-Reported Outcomes measures: the case of the BiblioPRO virtual library (2022)
Jornada científica CIBERESP 2022 (https://jornadacientifica.ciberesp.es/). Centro de Investigación Biomédica en Red, Epidemiología y Salud Pública.
Nuria Lebeña, Alberto Blanco, Alicia Pérez, Arantza Casillas
Preliminary exploration of topic modelling representations for Electronic Health Records coding according to the International Classification of Diseases in Spanish (2022)
Expert Systems with Applications
Gildo Fabregat Ander Cejudo Juan Martinez-Romo Alicia Pérez Lourdes Araujo Nuria Lebeña Maite Oronoz Arantza Casillas
Approximate Nearest Neighbour Extraction Techniques and Neural Networks for Suicide Risk Prediction in the CLPsych 2022 Shared Task (2022)
CLPsych 2022 Shared Task, Accepted in CLPsych 2022 Shared Task, July 15th 2022
Bernardo Magnini, Begoña Altuna, Alberto Lavelli, Anne-Lyse Minard, Manuela Speranza, and Roberto Zanoli
European Clinical Case Corpus (2022)
Bernardo Magnini, Begoña Altuna, Alberto Lavelli, Anne-Lyse Minard, Manuela Speranza, and Roberto Zanoli (2022). European Clinical Case Corpus. Georg Rehm ed. European Language Grid, A Language Technology Platform for Multilingual Europe. Springer, Cham, Switzerland. https://doi.org/10.1007/978-3-031-17258-8
A Garcia Olea, I Valdelvira Vazquez, I Diez Gonzalez, A Atutxa Salazar, K Gojenola Galletebeitia, J M Ormaetxe Merodio
Prediction of new onset atrial fibrillation recurrence or persistence with artificial intelligence: first insights of the PRAFAI study (2022)
European Heart Journal - Digital Health, Volume 3, Issue 4, December 2022,
Alberto Blanco
Extreme multi-label deep neural classification of Spanish health records according to the International Classification of Diseases (2022)
Thesis
Sara Santiso , Alicia Pérez, Arantza Casillas
Adverse Drug Reaction extraction: Tolerance to entity recognition errors and sub-domain variants (2021)
Computer Methods and Programs in Biomedicine. https://www.sciencedirect.com/science/article/pii/S0169260720317247?dgcid=author
Sara Santiso
Adverse Drug Reaction extraction on Electronic Health Records written in Spanish: A PhD Thesis overview (2021)
IberSPEECH 2020 https://www.isca-speech.org/archive_v0/IberSPEECH_2021/pdfs/34.pdf
Iakes Goenaga, Xabier Lahuerta, Aitziber Atutxa, Koldo Gojenola
A Section Identification Tool: towards HL7 CDA/CCR Standardization in Spanish Discharge Summaries (2021)
Journal of Biomedical Informatics
Prys Delyth, Sarasola Kepa, Alegria Iñaki, Perez-de-Viñaspre Olatz, Palmer Geraint, Corcoran Padraig, Arman Laura, Knight Dawn ,Spasic Irena, Bryn Jones Dewi, Cooper Sarah, Prys Myfyr, Muralidaran Vigneshwaran, O’Hare Keeziah, Prys Gruffudd, Watkins Gareth, Roberts Jonathan C, Butcher Peter W. S., Lew Robert, Rees Geraint, Sharma Nirwan, Frankenberg-Garcia Ana, Farhat Leena Sarah, Teahan William John.
Language and Technology in Wales: Volume I (2021)
Language and Technology in Wales: Volume I. University of Bangor. ISBN: 978-1-84220-189-3
Prys Delyth, Sarasola Kepa, Alegria Iñaki, Perez-de-Viñaspre Olatz, Palmer Geraint, Corcoran Padraig, Arman Laura, Knight Dawn ,Spasic Irena, Bryn Jones Dewi, Cooper Sarah, Prys Myfyr, Muralidaran Vigneshwaran, O’Hare Keeziah, Prys Gruffudd, Watkins Gareth, Roberts Jonathan C, Butcher Peter W. S., Lew Robert, Rees Geraint, Sharma Nirwan, Frankenberg-Garcia Ana, Farhat Leena Sarah, Teahan William John.
Iaith a Thechnoleg yng Nghymru: Cyfrol 1 (2021)
Iaith a Thechnoleg yng Nghymru: Cyfrol 1. University of Bangor. ISBN: 978-1-84220-189-6
Alberto Blanco, Sonja Remmer, Alicia Pérez, Hercules Dalianis, Arantza Casillas
On the Contribution of Per-ICD Attention Mechanisms to Classify Health Records in Languages With Fewer Resources than English (2021)
Proceedings of the International Conference on Recent Advances in Natural Language Processing, RANLP 2021, Varna, Bulgaria, September 1-3, 2021. Deep Learning for Natural Language Processing Methods and Applications.
Ander Cejudo, Owen Trigueros, Alicia Pérez, Arantza Casillas, Daniel Cobos
Verbal Autopsy: First Steps Towards Questionnaire Reduction (2021)
Ekštein K., Pártl F., Konopík M. Text, Speech, and Dialogue. TSD 2021. Lecture Notes in Computer Science, vol 12848. Springer, Cham.
Sergio Santana, Alicia Pérez, Arantza Casillas, Maite Oronoz
Erlazio-erauzketa testu klinikoetan hizkuntzaren prozesamenduaren bidez (2021)
IV. IKERGAZTE NAZIOARTEKO IKERKETA EUSKARAZ. UEU
Beatriz Pereda-Goikoetxea, María Isabel Elorza-Puyadena Mikel Lersundi-Ayestaran Joseba Xabier Huitzi-Egilegor María José Uranga-Iturrioz Blanca Marín-Fernández
Emakumeen emozio-zurrunbiloa erditzean (2021)
Ekaia, 2021, 41, 31-48
Bernardo Magnini, Begoña Altuna, Alberto Lavelli, Manuela Speranza, Roberto Zanoli
The E3C Project: European Clinical Case Corpus (2021)
Proceedings of the Annual Conference of the Spanish Association for Natural Language Processing: Projects and Demonstrations (SEPLN-PD 2021). Pages 17-20. ISSN: 1613-0073. URL: http://ceur-ws.org/Vol-2968/paper5.pdf
Lana Yeganova, Dina Wiemann, Mariana Neves, Federica Vezzani, Amy Siu, Inigo Jauregi Unanue, Maite Oronoz, Nancy Mah, Aurélie Névéol, David Martinez, Rachel Bawden, Giorgio Maria Di Nunzio, Roland Roller, Philippe Thomas, Cristian Grozea, Olatz Perez-de-Viñaspre, Maika Vicente Navarro, and Antonio Jimeno Yepes
Findings of the WMT 2021 Biomedical Translation Shared Task: Summaries of Animal Experiments as New Test Set (2021)
In Proceedings of the Sixth Conference on Machine Translation, pages 664–683, Online. Association for Computational Linguistics.
Olea, AG; Merodio, JMO ; Atutxa Salazar, A.; Gonzalez, ID; De La Prieta, IF; Rada, MM; De Luis, EA ; Alzaga, KU; Rodriguez, UI; Lili, IP; Rodriguez, AR; Izaguirre, AL; Urizar, RC; Alcalde, MC; Gojenola Galletebeitia, K.
The role of congestive heart failure at atrial fibrillation onset in the data entry errors of electronic health records (2021)
EUROPEAN JOURNAL OF HEART FAILURE. Volume 23 Page 303-304 Supplement 2. SEP 2021. Document Type: Meeting Abstract
Alberto Blanco, Olatz Perez de Viñaspre, Alicia Pérez, Arantza Casillas
Boosting ICD multi-label classification of health records with contextual embeddings and label-granularity (2020)
Computer Methods and Programs in Biomedicine, Volume 188, 105264
Rebecka Weegar, Alicia Pérez, Arantza Casillas, Maite Oronoz
Recent advances in Swedish and Spanish medical entity recognition in clinical texts using deep neural approaches (2020)
BMC Medical Informatics and Decision Making
Sara Santiso
Adverse Drug Reaction extraction on Electronic Health Records written in Spanish (2020)
Procesamiento del Lenguaje Natural http://journal.sepln.org/sepln/ojs/ojs/index.php/pln/article/view/6203
Sara Santiso, Alicia Pérez, Arantza Casillas, Maite Oronoz
Neural negated entity recognition in Spanish electronic health records (2020)
Journal of Biomedical Informatics (JBI) https://doi.org/10.1016/j.jbi.2020.103419
Alberto Blanco, Alicia Pérez, Arantza Casillas, Daniel Cobos
Extracting Cause of Death from Verbal Autopsy with Deep Learning interpretable methods (2020)
IEEE Journal of Biomedical and Health Informatics
Santana, S and Pérez, A and Casillas, A
HapLap at eHealth-KD Challenge 2020 (2020)
Proceedings of the Iberian Languages Evaluation Forum co-located with 36th Conference of the Spanish Society for Natural Language Processing, IberLEF@ SEPLN
Alberto Blanco, Alicia Pérez, Arantza Casillas
Extreme multi-label ICD classification: sensitivity to hospital service and time (2020)
IEEE Access, Volume 8, 183534-183545
Alberto Blanco, Alicia Pérez, Arantza Casillas
Automatic Classification of Medical Records with Multi-label Classifiers and Similarity Match Coders (2020)
CEUR Workshop Proceedings, Vol 2696 - Working Notes of CLEF 2020 - Conference and Labs of the Evaluation Forum
Kepa Sarasola, Iñaki Alegria, Olatz Perez de Viñaspre
Language Technology for Language Communities: An Overview based on Basque Experience 2020 (2020)file2 (2020)
Symposiwm Academaidd Technolegau Iaith Cymru 2020 -11-04 // Wales Academic Symposium on Language Technologies 2020-11-04
Iker de la Iglesia, Mikel Martinez-Puente, Alexander Platas, Iria San Miguel, Aitziber Atutxa, Koldo Gojenola
MEDIA team at the CLEF-2020 MultilingualInformation Extraction Task (2020)
Working Notes of CLEF 2020 - Conference and Labs of the Evaluation Forum Thessaloniki, Greece, September 22-25, 2020.
Rachel Bawden, Giorgio Maria Di Nunzio, Cristian Grozea, Inigo Jauregi Unanue, Antonio Jimeno Yepes, Nancy Mah, David Martinez, Aurélie Névéol, Mariana Neves, Maite Oronoz, Olatz Perez-de-Viñaspre, Massimo Piccardi, Roland Roller, Amy Siu, Philippe Thomas, Federica Vezzani, Maika Vicente Navarro, Dina Wiemann and Lana Yeganova
Findings of the WMT 2020 Biomedical Translation Shared Task: Basque, Italian and Russian as New Additional Languages (2020)
Fith Conference on Machine Translation (WMT20). Shared Task: Biomedical Translation Task
Bernardo Magnini, Begoña Altuna, Alberto Lavelli, Manuela Speranza, Roberto Zanoli
The E3C Project:Collection and Annotation of a Multilingual Corpus of Clinical Cases (2020)
In Johanna Monti, Felice Dell'Orletta and Fabio Tamburini (eds.), Proceedings of the Seventh Italian Conference on Computational Linguistics. Associazione Italiana di Linguistica Computazionale. Bologna, Italy, 2020.
Lima S., Pérez-Miguel N., Cuadros M. and Rigau G.
NUBes: A Corpus of Negation and Uncertainty in Spanish Clinical Texts. (2020)
Proceedings of the 12th Language Resources and Evaluation Conference (LREC'20). Marseille, France. 2020.
Perez, N; Accuosto, P; Bravo, A; Quadres, M; Martinez-Garcia, E; Saggion, H; Rigau, G.
Cross-lingual semantic annotation of Biomedical literature: experiments in Spanish and English (2020)
Bioinformatics, 36, 6, 1872-1880. , ISSN 1367-1880
Sara Santiso, Alicia Pérez, Arantza Casillas
Smoothing dense spaces for improved relation extraction between drugs and adverse reactions (2019)
International Journal of Medical Informatics https://doi.org/10.1016/j.ijmedinf.2019.05.009
Aitziber Atutxa, Arantza Diaz de Ilarraza, koldo Gojenola,Maite Oronoz, Olatz Perez de Viñaspre
Interpretable Deep Learning to Map Diagnostic Texts to ICD10 Codes (2019)
International Journal of Medical Informatics https://doi.org/10.1016/j.ijmedinf.2019.05.015 Link to publication: https://authors.elsevier.com/c/1ZANI4xGJ~syOE
Arantza Casillas, Nerea Ezeiza, Iakes Goenaga, Alicia Pérez, Xabier Soto
Measuring the Effect of Different Types of Unsupervised Word Representations on Medical Named Entity Recognition (2019)
International Journal of Medical Informatics, Volume 129, September 2019, Pages 100-106.
Alberto Blanco, Arantza Casillas, Alicia Pérez, Arantza Diaz de Ilarraza
Multi-label clinical document classification: Impact of label-density (2019)
Expert Systems with Applications, Volume 138, 112835
Olatz Perez-de-Viñaspre, Maite Oronoz, Natalia Elvira
KabiTermICD: Nested Term Based Translation of the ICD-10-CM into a Minor Language (2018)
Workshop "MultilingualBIO: Multilingual Biomedical Text Processing" of LREC 2018. Proceedings of the workshop. Miyazaki (Japan), 8th May 2018.
Rebecka Weegar, Alicia Pérez, Hercules Dalianis, Koldo Gojenola, Arantza Casillas, Maite Oronoz
Ensembles for clinical entity extraction (2018)
Revista: Procesamiento del Lenguaje Natural, Vol 60, p. 13-20, mar. 2018. ISSN 1989-7553. DOI 10.26342/2018-60-1
Igone Zabala
Euskararen lantze funtzionala eta profesionalen komunikazio-gaitasunen garapena osasun-alorrean (2018)
BAT Soziolinguistika Aldizkaria 108, 2018 (3): 11-34
Jorge Pérez, Alicia Pérez, Arantza Casillas, Koldo Gojenola
Cardiology record multi-label classification using Latent Dirichlet Allocation (2018)
Computer Methods and Programs in Biomedicine https://doi.org/10.1016/j.cmpb.2018.07.002
Aitziber Atutxa, Arantza Casillas, Nerea Ezeiza, Iakes Goenaga, V. Fresno, Koldo Gojenola, R. Martinez, Maite Oronoz, Olatz Perez-de-Viñaspre
IxaMed at CLEF eHealth 2018 Task 1: ICD10 Coding with a Sequence-to-Sequence approach (2018)
CLEF 2018 Online Working Notes. CEUR-WS
Mikel Laburu, Alicia Pérez, Arantza Casillas, Iakes Goenaga, Maite Oronoz
Can I find information about rare diseases in some other language? (2018)
IEEE International Conference on Bioinformatics and Biomedicine. Artificial Intelligence techniques for Biomedicine and Healthcare. Madrid (December, 2018); ISBN: 978-1-5386-5487-3; Pgs: 2102-2108
Aitziber Atutxa, Alicia Pérez, Arantza Casillas
Machine Learning approaches on Diagnostic Term Encoding with the ICD for Clinical Documentation (2017)
IEEE Journal of Biomedical and Health Informatics, issue 99
Zabala I., San Martin I., Lersundi M.
Learning terminology in order to become an active agent in the development of Basque biomedical registers (2016)
Language Learning in Higher Education. Journal of CercleS (European Confederation of Language Centres in Higher Education). De Gruyter Mouton. Volume 6, Issue 1 (May 2016). Special issue: Teaching Medical Discourse in Higher Education. ISSN (Online) 2191-6128, ISSN (Print) 2191-611X, DOI: 10.1515/cercles-2016-0007 URL: http://www.degruyter.com/view/j/cercles.2016.6.issue-1/cercles-2016-0007/cercles-2016-0007.xml
Zabala I., San Martin I., Lersundi M., Azkue J. J., Mendizabal J.L.
The Elaboration of Human Anatomy Terminology for the Basque Language: the Contribution of Translators, Linguists and Experts (2012)
Terminàlia Vol. 6: 15-25
